Open Access
Article
Identification of novel serum biomarkers for gastric cancer by magnetic bead
Wentao Liu1,Xiang Gao1,Qu Cai1,Jianfang Li1,Zhenglun Zhu1,Chen Li1,Xuexin Yao1,Qiumeng Yang1,Ming Xiang1,Min Yan1,Zhenggang Zhu1
1
Department of Surgery, Ruijin Hospital, Shanghai Jiao Tong University, Shanghai Institute of Digestive Surgery, Shanghai 200025, PR China
DOI: 10.2741/E155 Volume 2 Issue 3, pp.961-971
Published: 01 June 2010
(This article belongs to the Special Issue Biosensors and their applications)
Abstract

Early diagnosis and early treatment is known to improve prognosis for gastric cancer. Magnetic affinity beads can be used to extract peptides from un-fractionated serum samples. Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF-MS) can detect the presence and the molecular mass of peptides. MALDI-TOF-MS mass spectra of peptides and proteins were generated after WCX CLINPROT bead fractionation of 62 gastric cancer serum samples. The discovery set consisted of 44 samples while the validation set was 18 serum samples. The spectra were analyzed statistically using flexAnalysisTM and Clin-ProtTM bioinformatic software. The six most significant peaks were selected out by ClinProTool software and utilized to train a Supervised Neural Network to identify gastric cancer sera from control sera. The sensitivity and specificity of the model when tested on the validation set were 100% and 75%, respectively. A set of 6 peptides that can be used to distinguish serum from gastric cancer patients with good sensitivity and specificity were identified, and these peptides may be useful biomarkers to distinguish cancer individuals who may benefit from radiologic or endoscopic examination.

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Wentao Liu, Xiang Gao, Qu Cai, Jianfang Li, Zhenglun Zhu, Chen Li, Xuexin Yao, Qiumeng Yang, Ming Xiang, Min Yan, Zhenggang Zhu. Identification of novel serum biomarkers for gastric cancer by magnetic bead. Frontiers in Bioscience-Elite. 2010. 2(3); 961-971.